Protein Info for IAI47_02840 in Pantoea sp. MT58

Annotation: YraN family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 TIGR00252: TIGR00252 family protein" amino acids 15 to 129 (115 residues), 145.7 bits, see alignment E=3.2e-47 PF02021: UPF0102" amino acids 24 to 115 (92 residues), 89.3 bits, see alignment E=9e-30

Best Hits

Swiss-Prot: 68% identical to Y4337_SERP5: UPF0102 protein Spro_4337 (Spro_4337) from Serratia proteamaculans (strain 568)

KEGG orthology group: K07460, putative endonuclease (inferred from 97% identity to pva:Pvag_2739)

Predicted SEED Role

"Endonuclease (EC 3.1.-.-)" (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>IAI47_02840 YraN family protein (Pantoea sp. MT58)
MEPVSPGRNRAGQLNRRQIGAGHEEDARRYLEQAGLIWVASNVHFRNGELDLIMRDGHCW
VFVEVRYRRDARYGGALASVTRNKQQKLLRAAALWLAQRGGSFETVNCRFDIIAITGTAL
EWLPNAFNADV