Protein Info for IAI47_02720 in Pantoea sp. MT58

Annotation: translocation/assembly module TamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1255 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF04357: TamB" amino acids 920 to 1255 (336 residues), 237 bits, see alignment E=2.2e-74

Best Hits

Swiss-Prot: 65% identical to TAMB_SALTS: Translocation and assembly module subunit TamB (tamB) from Salmonella typhimurium (strain SL1344)

KEGG orthology group: K09800, hypothetical protein (inferred from 77% identity to ebi:EbC_04750)

Predicted SEED Role

"Uncharacterized protein YtfN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1255 amino acids)

>IAI47_02720 translocation/assembly module TamB (Pantoea sp. MT58)
MKLWKKVLIGILIFLVVLLGGVAFLIGTTPGLHLVLKGASRWVPGLSIKQVDGGWRNLTL
NGLRFEMPGVSVDAGQIHLAVDLNCLLHSSVCVNDVSLRDISVVVDSKKMAPAAAAPEEE
SSNTNLSTPYPITLRHLGLHNINVKVDDTAISLLDFTTGLQWQDRALTLNPTHIQSLLIA
LPKAAKVVKEEVVDPKVQQPHPAEKPLGETLQAMFAQPLLPALPDFRLPLDIDVQQILGE
QLRVTGDTDIAVSRLLLKAKTADRQMQLTTLEVDSNLGNLKGSGQATLADNWPVDFSLNG
TVNTDPIKGEKLALKLNGAMRDALKLGLNLSGPVNAQLDATTQLAVAGLPLSLQLTSPQL
RWPLTGPIQYQADNLDYQFKGKATDYVMSLQTAVKGESVPPANVSLTGKGNVEQFSLDRL
RVAALQGNIDLTALVDWSKAISWRSELTLAGINTAKQYPDWPARLDGKITTRGSLYGGTW
QLSVPQLQLKGNVKKNAVTADGSLTGNSYNQWTVPGIKLALGRNHLDVKGALGDSLDLDA
SIDAPQLDNALPGLGGVVNGTIKARGTLKAPQLLADLNARGLRWQQMQINRVTLNGDVRS
GEQVAGKLQLRVEQLKQDALNIGLLTLNAEGNERQHQMKLTVQGKPVSGQLALNGSFDRQ
TERWKGSLNDTRFDTPVGEWRLTRAMAIDYLNSRQTATIGPHCWQNPNAQICVPEPIEAG
PAGKAHVVLNRFDLAMVKPFMPEATQLSGLFSGDVRVNWTADGSLPTGTVALKGNGVKVV
QDVQGNSLPIAFDTLNLNAALRNGRAQLDWLIRIAKNGQLDGNVQIDDPQNRRTLGGNVN
IRNISLAMINPALMQGEKIKGSLNSSLRLGGSVQQPQVFGQLGLTGVDVDGNFMPVDLTA
ANLNLVFNGMSSTLNGLVQTAQGNINLSGNADWSQLDNWRARIAAQGSRVRVTVPPMVRM
DVSPDLVFEATPAAFNLDGSVDIPWARITVQEVPESATGVSSDEVMLDKQLKPIAPQTAA
IPINSNLVIHVGNDVRLSAFGLKAKLNGDLKMVQDKSGLGLNGQINIPSGRFHAYGQDLI
VRKGELQFAGPPDQPYVNLEAIRNPDATEDGVTAGLRVTGLADEPKAEVFSDPAMSQQEA
LSYLLRGQGLGSDGDSNALTSALVGLGVAQSGQVVGKIGETFGVSNLAVDTAGVGDSQQV
QVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF