Protein Info for IAI47_02710 in Pantoea sp. MT58

Annotation: HlyC/CorC family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 5 to 6 (2 residues), see Phobius details amino acids 25 to 28 (4 residues), see Phobius details transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 56 to 80 (25 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 140 to 164 (25 residues), see Phobius details PF01595: CNNM" amino acids 6 to 197 (192 residues), 143.5 bits, see alignment E=8.9e-46 PF00571: CBS" amino acids 285 to 333 (49 residues), 19 bits, see alignment 2.3e-07 PF03471: CorC_HlyC" amino acids 348 to 425 (78 residues), 77.4 bits, see alignment E=9.9e-26

Best Hits

Swiss-Prot: 85% identical to YTFL_ECO57: UPF0053 inner membrane protein YtfL (ytfL) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 99% identity to pva:Pvag_2768)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>IAI47_02710 HlyC/CorC family transporter (Pantoea sp. MT58)
MLDSLLVILLLIVISAFFSLSEISLAAARKIKLKLLADEGNVNAQRVLKMQETPGMFFTV
VQIGLNAVAILGGIVGDAAFSPVFSGLFNRFVSPELAEQLSFICSFTIVTSLFILFADLT
PKRVGMVAPETIALRIINPMRFCLLVMRPLVFLFNGLANVFFRIFKLPMVRKDDITSDDI
YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTSRENIVWFDLHEDETSLKTKIAQ
HPHSKFLVCSGDIDHIVGYVDSKELLLRVLGNQSMALNSGLQIRSALIVPDTLTLSEALE
SFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGMEEQIVARDENSWLVEGGTP
IDDVMRVLDIDDFPQSGNYETIGGFMMYMLRKIPKRTDFVKFAGYKFEVVDIDSYRIDQL
LVTRIDERPPVLNLTKTEEE