Protein Info for IAI47_02625 in Pantoea sp. MT58

Annotation: ribonuclease R

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 829 TIGR02063: ribonuclease R" amino acids 19 to 744 (726 residues), 908.2 bits, see alignment E=3.7e-277 PF08461: HTH_12" amino acids 23 to 85 (63 residues), 54.7 bits, see alignment 1.9e-18 TIGR00358: VacB and RNase II family 3'-5' exoribonucleases" amino acids 67 to 744 (678 residues), 888.8 bits, see alignment E=2.1e-271 PF08206: OB_RNB" amino acids 87 to 144 (58 residues), 75.5 bits, see alignment 5.3e-25 PF17876: CSD2" amino acids 164 to 238 (75 residues), 80.8 bits, see alignment E=1.6e-26 PF00773: RNB" amino acids 260 to 587 (328 residues), 383.8 bits, see alignment E=1.9e-118 PF00575: S1" amino acids 660 to 742 (83 residues), 56 bits, see alignment E=1e-18

Best Hits

Predicted SEED Role

"3'-to-5' exoribonuclease RNase R" in subsystem RNA processing and degradation, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (829 amino acids)

>IAI47_02625 ribonuclease R (Pantoea sp. MT58)
MSKDPFQDREAEKYENPIPSREFILALLEKREKPASREELAEEMNLQEEEHLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH
GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGAGFVVPDDSRLSFDILIPP
EETMNARMGSVVVVELVQRPNRRSKAIGKIAEILGDDMGTSLAVDMALRTHEIPHTWPPE
VEAQISKLKEEVPEEAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGKLTGFKHYEAVMNSHARLTYNKVWNILQGDKELRQQYAPLVKDLEELNNLYHALEAA
REERGGISFETEEAKFIFNAERRIERVERASRNDAHKLIEECMILANIASARFVEKNQEP
ALFRDHDRPTDESIKSFRTVLNELGLTLPGGNKPQPVDYAALLKQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGEGKGLVQRA
IKYLMPKDKNAKDLTTATGGYHYDMPEMLQLGLHCSLTERRADEATRDVADWLKCDFMQD
QVGNVFNGVISSVTGFGFFVRLSDLFIDGLVHVSTLDNDYYRFDPVGQRLIGESGGRTYR
LGDTVEVRVEAVHMDERKIDFALISSQRQVRGEGKTARDRAKRDDNAPTKRRRNASRKSN
FEPDSAFRGDKGKPAAADSANKSKNVSEKTRKIAAATRAKRARKKAQPD