Protein Info for IAI47_02460 in Pantoea sp. MT58

Annotation: AsmA2 domain-containing protein YhdP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1279 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 1222 to 1243 (22 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 2 to 1275 (1274 residues), 1363.2 bits, see alignment E=0 PF13116: DUF3971" amino acids 506 to 788 (283 residues), 302.3 bits, see alignment E=4.4e-94 PF13502: AsmA_2" amino acids 1023 to 1264 (242 residues), 222.5 bits, see alignment E=6.3e-70

Best Hits

KEGG orthology group: None (inferred from 62% identity to ebi:EbC_40680)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1279 amino acids)

>IAI47_02460 AsmA2 domain-containing protein YhdP (Pantoea sp. MT58)
MRQLPRILLLLVAAIIVIVALLVSGLRLVMPHLDSYRSNLLQFISDRAGVPVNASQLEGK
WENFGPTLQVRDLNVDLNENGKLSINRINLALDVWQSLLHWRWQFRDLTFWQLHLETNRP
LLDNDKEKNSFRPAQINELFLRQFDHFDLRDSTIRFRTPSGQHAELAIPRLSWVNEDNRH
RAEGEVSLSSFTGQHGVVQVRLDLNDSNGVLNDGRIWMQADDVDMRPWLGRWVRDNTRLD
SARFSLAAWVNLRDGDIYAGDLLLRKGGASWQGETGRHRIDVDGLTAHLSRFQNGWVVNV
PHTRLSTDGQSWPAGHFSLLWRPEDKQLLGPDGQPEVRVRATQLVLSHIAPIVPLFAPLS
PALFENWQTLQPQGTVDGLALDIPLQQPEKTRVQVKWRDFSWQHWKLLPGISHLSGEARG
SLSNGQVSVDMGAATVPYGDMFQAPLEIKRVTGAVRWLRDEHGLTLAGENLDLQARSLWA
RGDFSYQQNSGGEPRLDILAGIRLTDAGDAWRYFPVPLMGNSLTHYLSGAVKGGRVDNAT
LLFAGNPALFPFKHNDGMFQVWVPLRQATYAFQPKWPALSNLDIDLNFLNDGLWMKAPIA
RLGEVDAHNVTAVIPDYLKEKLIIDGDISGEGPQIADYFDQTPLKPSLGAALSELEIKGR
VGGHLNLDIPLDGQQVHARGNVDLNNNSLFIKPLKTTINNLSGRFRYDNGNLESEDLRAN
WFGQPMGVRFSTKENPDDFGVNVKLQGDWQPAKISEVPAAVSKQLGGHLPWQGDVNITLP
HHGGARYDVVLNGNAKEVSSHLPAPLDKNAGEAMPIAIQASGDLNHFDLSGSIDEDHRFN
SRWLLEPTLRVDRGIWLNDARKTPALPDHAGMVLNLPALDGEAWVAMMAAGGSSGTRASG
GGSDFQTGGVTLPGNITLRSPAVTLAGQQWHDVEATLAQGSGGNSQVSVNAKELRGALLM
APKAPWQVNLDYLYYNPQWGNDAGDADKGGKASPQQAKNINFSQWPALQLRCKECWVLGQ
KYGQISAALQPEGDKLALTNGKVDTGSSQLKINGEWINRPDDQRTSLKGTLKGPNVNNAT
NWFGVNTPLRDAPFDISYDLHWRSAPWQPSAETLSGTLKTHFGKGQIADVNTGTAGKILR
LVSFDALLRKLRFDFSDTFTNSFYFDSINGTAWIENGRMRTDNLLVDGLEADIAMQGNLD
LVKRQIDMEAVVAPEISASVGVATAFAINPVIGAAVFAASKVLGPLWNKISLLRYHISGP
LDKPEINEVLRKPRETDNK