Protein Info for IAI47_01805 in Pantoea sp. MT58

Annotation: RNA-binding transcriptional accessory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 775 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF09371: Tex_N" amino acids 9 to 192 (184 residues), 248.3 bits, see alignment E=1.3e-77 PF16921: Tex_YqgF" amino acids 327 to 450 (124 residues), 168.9 bits, see alignment E=2e-53 PF14635: HHH_7" amino acids 463 to 555 (93 residues), 40.3 bits, see alignment E=1.1e-13 PF12836: HHH_3" amino acids 490 to 554 (65 residues), 99.9 bits, see alignment E=2.2e-32 PF17674: HHH_9" amino acids 560 to 629 (70 residues), 82.7 bits, see alignment E=8.1e-27 PF00575: S1" amino acids 648 to 719 (72 residues), 84.5 bits, see alignment E=1.6e-27

Best Hits

Swiss-Prot: 87% identical to YHGF_ECOLI: Protein YhgF (yhgF) from Escherichia coli (strain K12)

KEGG orthology group: K06959, uncharacterized protein (inferred from 87% identity to ebi:EbC_42050)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (775 amino acids)

>IAI47_01805 RNA-binding transcriptional accessory protein (Pantoea sp. MT58)
MMKVLSQIIASELQARPEQVDAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLS
YLRELEDRRQSILKSIDDQGKLTDDLARAINTTLSKTELEDLYLPYKQKRRTRGQIAIEA
GLEPLADTLWQEPSHIPEQLAEQYVDADKGVADVRAALDGARYILMERFAEDAALLAKVR
NYLWKNAHLVSRVVEGKEEAGAKFRDYFDHHEALSSVPSHRALAMLRGRNEGVLQLSLNA
DPQFDEAPRESHGETLIAEHLNLRLNNAPADSWRKAVVSWTWRIKVMLHLETELMGTVRE
RAEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKVVATDTVYPHT
GQTAKAAAAVAALCIKHQVELVAIGNGTASRETERFFLDLQQQFPQVTAQKVIVSEAGAS
VYSASELAALEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQSQLAK
KLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVGWRDENGRFQNRQQLLKVSR
LGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATEQALSDLMGNAGSLRNLS
PRDFIDERFGLPTVTDIMKELEKPGRDPRPEFKTAQFAEGVETLNDLTPGMILEGAVTNV
TNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVMEVDLQRKRIALTMRL
DEQPGEGNARGGAKNAAPREEKRPAAGKGRPRPASASAGNSAMGDALAAAFGKKR