Protein Info for IAI47_01265 in Pantoea sp. MT58

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 47 to 72 (26 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 286 to 304 (19 residues), see Phobius details amino acids 310 to 336 (27 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details amino acids 375 to 394 (20 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 322 (301 residues), 118.6 bits, see alignment E=3.1e-38 PF00083: Sugar_tr" amino acids 54 to 187 (134 residues), 40.3 bits, see alignment E=2e-14

Best Hits

Swiss-Prot: 38% identical to YDER_BACSU: Uncharacterized MFS-type transporter YdeR (ydeR) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_3062)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>IAI47_01265 MFS transporter (Pantoea sp. MT58)
MSAISTQTQNESLSTPLVFTLAAGAGLSVASIYYSQPMLDIISKQFNAGIGAVGMVPMLT
QAGYALGILLLAPLGDRHDRRTIIFIKGLLLVAALLLCGFSGGLSALLIASFITGLTATV
AQDIVPASAALAPERSRGKTVGTVMTGLLVGILLSRVVSGVVAEYFGWRTMYMIAALAVL
LITLTLWRVLPRFTPGTSVSYPRLLLSLVHLWRHHQTLRRAALAQGLLSVAFSAFWSTLA
LMLSDRFHLDSAVAGAFGLAGAAGAMAAPLAGSFADRIGPARVTQAGAALVTISFALMFL
LPLLPMPAQLALIVVCTIGFDLGVQATLVAHQTLVYGLAPEARSRLNALLFTVVFIGMAT
GAALGSLALAHWGWNGVVALATIAGAAAVAVRFASRHLKN