Protein Info for IAI47_00620 in Pantoea sp. MT58

Annotation: DNA repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 PF20582: UPF0758_N" amino acids 5 to 73 (69 residues), 70 bits, see alignment E=1.5e-23 TIGR00608: DNA repair protein RadC" amino acids 6 to 218 (213 residues), 277.7 bits, see alignment E=3.5e-87 PF04002: RadC" amino acids 98 to 217 (120 residues), 157 bits, see alignment E=2e-50

Best Hits

Swiss-Prot: 68% identical to Y4100_PECCP: UPF0758 protein PC1_4100 (PC1_4100) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 94% identity to pva:Pvag_3196)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>IAI47_00620 DNA repair protein RadC (Pantoea sp. MT58)
MKIKGPREKLQKLGANSLTDTELLAIFLRTGSPGQNVLELAGEMLEGFGSLYLLMTSDKA
AFGEVKGIGDAKLAQLHAVAELAKRFFASKLVRESAMENPQITRQYLQSLLAHQEREIFM
ALFLDNQHRVLRAQNMFSGSINSVEVHPREIVREALKLNAAALILAHNHPSGMAEPSRAD
REVTHKVSEACQLFDIRLLDHLVIGHGEYVSFAERGWL