Protein Info for HSERO_RS23445 in Herbaspirillum seropedicae SmR1

Annotation: 2-hydroxychromene-2-carboxylate isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 PF01323: DSBA" amino acids 5 to 195 (191 residues), 140.1 bits, see alignment E=3.8e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4688)

Predicted SEED Role

"2-hydroxychromene-2-carboxylate isomerase" in subsystem Naphtalene and antracene degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IY32 at UniProt or InterPro

Protein Sequence (200 amino acids)

>HSERO_RS23445 2-hydroxychromene-2-carboxylate isomerase (Herbaspirillum seropedicae SmR1)
MSNPIDFYFDFSSPYGYFAAVEIDKLAAQHGRDVNWHPILLGPIFKALGTNSLVNIPVKG
EYSRHDMERTARFHNIFYKAPSHFPIGTQVAARATLWVQQTQPAKAVELIKTLYSAYFTE
DIDISVVDNVLRIAADLGIDRNALQAALESPELKDQLRQSTEAAGQAGVFGSPFMIVDGE
QFWGFDRFPQLEALLKNGKI