Protein Info for HSERO_RS23395 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 PF04361: DUF494" amino acids 1 to 151 (151 residues), 172.2 bits, see alignment E=3.6e-55

Best Hits

Swiss-Prot: 78% identical to SMG_JANMA: Protein Smg homolog (smg) from Janthinobacterium sp. (strain Marseille)

KEGG orthology group: K03747, Smg protein (inferred from 100% identity to hse:Hsero_4678)

Predicted SEED Role

"Protein of unknown function Smg" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IY22 at UniProt or InterPro

Protein Sequence (158 amino acids)

>HSERO_RS23395 hypothetical protein (Herbaspirillum seropedicae SmR1)
MFDVLVYLYETYYRPDACPEPEALVKKLSAIGFEEDEISQALGWLTDLEVANHEFADNYP
RQTAFSFGTRIYARQESDVLGVEAIGFIQFLESAKMLDPIQREIVIERALAAGEAPVGLE
KLKVIVLMVLWSQGKEPDGLMFEELFLDEEDAEPRLLH