Protein Info for HSERO_RS23340 in Herbaspirillum seropedicae SmR1

Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03330: DPBB_1" amino acids 109 to 193 (85 residues), 88.7 bits, see alignment E=2.4e-29 TIGR00413: rare lipoprotein A" amino acids 111 to 202 (92 residues), 130.5 bits, see alignment E=4e-42 PF05036: SPOR" amino acids 303 to 376 (74 residues), 36.8 bits, see alignment E=3.9e-13

Best Hits

KEGG orthology group: K03642, rare lipoprotein A (inferred from 100% identity to hse:Hsero_4667)

Predicted SEED Role

"Rare lipoprotein A precursor" in subsystem Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IY11 at UniProt or InterPro

Protein Sequence (378 amino acids)

>HSERO_RS23340 lipoprotein (Herbaspirillum seropedicae SmR1)
LRAAALLLPLLLAACGTTPPASRQGGVQAPTPVKAGSSRPSNVPALPAAGSGRGGYYKDD
GPGDHIPDGLLDVADAEPQVEPVSKAASRPYAVFGKTYVPITDNQPFVQRGIGSWYGKKF
HGQKTSSGELYDMYKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHSSRIIDLSY
TAALKLGYLGSGSSELEVERILPEEAQRMADARRNGTAVAAADPINKAADNGAGVSTGAV
EINSVSTQNLPPQPTVAAVQPINASTTSAANGAGLNGGGGIINAVASGSAPSPAMPQAVP
LTAGYYLQFGAYSQETNALQAKEKLLPSLSGIVDSMQAVQVNGLYRLYAGPYPTRPAAQN
AAMLVRQRSAGTPFIVER