Protein Info for HSERO_RS23080 in Herbaspirillum seropedicae SmR1

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 11 to 467 (457 residues), 402.7 bits, see alignment E=1.1e-124 PF02321: OEP" amino acids 65 to 259 (195 residues), 70.4 bits, see alignment E=9.2e-24 amino acids 286 to 452 (167 residues), 100.9 bits, see alignment E=4.1e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4616)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein CmeC" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXW0 at UniProt or InterPro

Protein Sequence (486 amino acids)

>HSERO_RS23080 RND transporter (Herbaspirillum seropedicae SmR1)
MRSRQLLLALACALSLAGCASGPDYTRPQVDMPAAWTSEAPWRSMQPADATPRGPWWERF
GDAQLNALQQQALAGNQTLAIATARLAQARAQLNVTGAAQTPQVNLNARAARSRISANRP
LTNYNSPNFSTVQNDFALGASVSYEVDFFGRVQRSVEAAGAAAEQSAADLENTRLLLTAE
LATNYFNLRELDVELDVVRRAIALQRQALELATARHDLGATSGLDMAQQQALLDSTLTQI
DLLGRQRAQYEHAIATLTGTPAPAFSITPSLTPITPPAIPVGVPSDVLERRPDIAAAERA
MAAANAQIGVASAAYYPSFMLQPSYGVDSRNWATLFNAPSLLWSLGVSASQSLFDGGRLR
AGVDFSQAGYEATVASYRRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARRVLEIAS
SRYEGGATPYLDVITAQQSLLNSERQAAQLMGQRLLVSVFLIKALGGDWQSRTPPAEAAG
AGPSRP