Protein Info for HSERO_RS22990 in Herbaspirillum seropedicae SmR1

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 PF00392: GntR" amino acids 13 to 76 (64 residues), 63.2 bits, see alignment E=2.1e-21 PF08220: HTH_DeoR" amino acids 41 to 75 (35 residues), 25.9 bits, see alignment 1e-09 PF07702: UTRA" amino acids 99 to 238 (140 residues), 113.6 bits, see alignment E=1e-36

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 100% identity to hse:Hsero_4598)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IX27 at UniProt or InterPro

Protein Sequence (244 amino acids)

>HSERO_RS22990 transcriptional regulator (Herbaspirillum seropedicae SmR1)
MLDQTGVDARLPLYLQLRDLLATQIRAQKWQPGQPIPSEAELSQTYQVAVGTVRRAIETL
MAEGLVERTHGRGTFVRKARFDNSLFRFFRFESADGRPLAPKSVIVSRKLVEAPAQAAEA
LQLKPHAKVIELHRLRMVDGQPVLAENIYLCAQRFKALADKAPEEFGDLLYPLYERECGL
IVASARETLTVETVTAAQAKLLGLTEKTPVVMIERIAFGSDGQPLEWRQSRGAASKFRYS
AEIR