Protein Info for HSERO_RS22735 in Herbaspirillum seropedicae SmR1

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF01547: SBP_bac_1" amino acids 44 to 328 (285 residues), 117.2 bits, see alignment E=1.5e-37 PF13416: SBP_bac_8" amino acids 51 to 341 (291 residues), 93.9 bits, see alignment E=1.6e-30

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 100% identity to hse:Hsero_4550)

Predicted SEED Role

"N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWX9 at UniProt or InterPro

Protein Sequence (420 amino acids)

>HSERO_RS22735 sugar ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
LPAFPRRPLLAACALALSLGSLAAAPSQAGTLTIESWRVDDLPLWQEVLIPAFQRSNPGI
TVKFSPTAPTEYDSSLAARMAGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKPGMEFFAP
AAKAAWQTDDGRDTFCMPMASVIHGFFYNTKIFKELNLEPPKTEAEFFKLLDTVKANGKY
APLVMGTAEQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYEAKLGKY
LPKGASAQTYSDSQNMFALGKGAVYPAGSWDIAYFNGKMDFAAFPPPVPKNGDACYISDH
NDIGMGINKKSKNKEDAYKFLAWLGSQEFADLYTNKVTGFFSLSNHLISVKDPIAKQMMG
WRKNCASTIRVNSQILNRGTPSMENEMWNVNAQVLNGKMTPQDAAAKIQSGFAKWYKPQQ