Protein Info for HSERO_RS22720 in Herbaspirillum seropedicae SmR1

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 transmembrane" amino acids 38 to 61 (24 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details PF00672: HAMP" amino acids 245 to 296 (52 residues), 28.5 bits, see alignment 1.6e-10 PF02518: HATPase_c" amino acids 399 to 508 (110 residues), 75.8 bits, see alignment E=3.7e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4547)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWX6 at UniProt or InterPro

Protein Sequence (509 amino acids)

>HSERO_RS22720 histidine kinase (Herbaspirillum seropedicae SmR1)
VPQPPEAFAQPAAQPAAPSPRGRLAALLDWLLPDSLLGRLSVVMIFGVLVTQVAGGLIWA
VQLRSKSEAETRTAAQHLAHSAASAIRYFMTLPPNYRPLMIQQLREMGGTRFFINANSSA
VAVKSIGDSRLAKLAIDVAAQTLREDLPFLPEARLAFAWPDGLPVASDGLTVNDLPDNWV
QHILMTKPNSAPVLVIQMQVESGRWIYLAALMPNPYFLDSDNPLWLDRLVLQGLSLAAIL
LLTILVVRWTTRPLAALADAAEAFGKGETVPSLPETGSREYVKTARAFSGMRERIKRYLE
DRERLFVSISHDLRTPITRLKLRTELMDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIH
ENRTEVRLDALVLRMIRDARLAGHEIAFTPSGINVIAKPLALKRAIGNLFDNALYYGQKV
EISIRPSPGAEGDLVEIEIRDHGPGVPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISR
NIVQAHGGELLLRNHPEGGLMATIILPAR