Protein Info for HSERO_RS22505 in Herbaspirillum seropedicae SmR1
Annotation: autotransporter adhesin protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See D8IWT2 at UniProt or InterPro
Protein Sequence (3631 amino acids)
>HSERO_RS22505 autotransporter adhesin protein (Herbaspirillum seropedicae SmR1) LLREKILRPDSPVSTALIVVPRHWGGGPGVSASAVGVVHMHAGRSDPACLLRRRAIMSIT VSNLTEASALLRTIKKRDILDVRAIDLDLVLILENGHKLIISRGAAAAANTPQLTLEFAD GDVALGEVFEKLNHIEVPPDTPPAATLTPQEIKRYGIKRVVKGKTTKNDENTDEQQTASK PETTDGKPADALASSDSPSVSQHSDASSTAIKSSLATPSVTEASAGSAADSSGSSSFSWP VIAGGLGLLAAAGGGGGGGGAAAAAPAAGSGPALSTLGGATSLGPLTNATVTAYDSQGRM IGKPVPVINGRYSLVLDVPGYKGLILLAVRDSTPGVADNFADEATLRIADLGDTVLRSVV QAEGGNQTINITALTELAALKAGLASGQTNLGAASQVTAPTVAAANAAVSALFMVNISSG DVLTTTVTDANGAAAINPAFARSSNTSARHYGIALKAIANLQLTDATRYPDQGVAIQKLA DSLGFSDTQPNKLKWRDTVTQSDLFNERIASRANDSSLSAEQRQQARALLDVLQKLPDGG SVNDYLVQNRVALPEPTLLTKNATPGASPWQTPATDGRLVLDQGELANGGLAVKAPPQAR VEVTLVGHDAQGREVTVTLPASAADSNGIAVLRADQAALDLFRQISREQPVTARVTVTDG DNSRANQDVWKNNADVRIDVSTPPGLTDFASNKIALVNDTFYNGGDGNDPLRTTPLGNED QITTDAAVRVLLTRVLKPEERLEFKVATSAGADNAPRYGEWFNPADLRIEGTDSNGQVRY VARNLTTSEGPVWIKARILLTAAQSGASQGSARELETPLRLTLDKTAPAQVRLAMTENRD DGLSSEDGVSSQTGVILMPRTSFETSAEVHLRLLGGSGTDGTTLLLLRANGERLALAPES WMRWQAGDQLQLIGQTLQGNGKARLQVRQLDAAGNFTDSIQTFISDSTRVIEQVVLLAVR EKAFNEAKAAVIAAQEAYDQAAAADKPAKQTTLAAAQNALQQAQAARDQAPEQVRLGLLK SDGSTRLSDLMGRTIDPALLPAILRAVAATGDPEQVNDGPGLRTLVNNVVSAVTAVLLKA SVYGDNDANPALTAADFDRLGIPGADHQATLTLANAALKTLPASRSNTIAALRTIVDAAA RVAALADGAAGNSSGAALPSAADYTALGVTTPLSEAAARVTGQVIDGKPLTEVSTTAQLE TIAAAAQRVTQHAAGVNLATPLTAQDFSALGIRGVTADNVGRLADALRDVPSSLRPATVD GVVDTLAEIRAIVALDLGTLQTLLNFAQHLSPIDPANPALLAPTLAQYDHPDLRAAGAEV TAARLASINDALSRVGAEAVDSWAKVGALVRSYTAILNAADGVSNAAALPTEADYSRIGV KTLQNKFSAATDNAARANAATLLGNVIDRSNRAEVDTVAKLESLADIVSRVTRIAAGKPE TVSAEEWKRLHVSPELSADQLRIVLPAIAASADDGSEVTTLAALSTRASNALGSAQRITD YANDAANTAPAQADYKNIGVSGVDDAQLVGAINSALATPAVTGSQVASLAALQTLVDTYR QLLQQADGKAGNTATANLAKLADFERIGVDMSALKALDSTVSGATGNAVQLLSSIIDSRN ASAIDTAPEIQQLAGLAHKLALAMQGRDAGQLQSADLALIGLDVDAGTLVQVRQQLASLA DNGSELNTFSQLRALVLGVAGVPTWNVVAGDDVINLAERQAGVSLSGSAGANDVLTLFYP DGSVMKSGITVQNEGGKWVWKYTLTSENWTRLNADGADGVEKILQLQARNTSTGVDSLKV AHKLSIDTVAPPANLLLSLDKDTGSSDTDGVTHQGKVNVTRLAAGAQWEYQIDNALFQTG SGNSVQVTQEGAHTLTVRQYDSAGNRSAAQTLNMTLDTTPPGAPIIALEKIGGTVNALPV TNNDTIRVTGLEAKATWQWRLNRSDFSENPDWSNGSGNSFSPTGMTPNQTRNWYVEVRQL DQAGNPGSVSRLSFTLDTTPPRTPRLALVANSGGDDALRVTNDGRIDVLDLDADSAWQYS TDGGATWSTGSGNRFTVNGDGDKQLRVRQTDVAGNTSTSTVLTMKLDTVAPVKPGLATLV NDSGRLQTDLLTNDARLQAPTPSEADLRFEYSVNNGAWTDISQAIKGAKDGGSDGDKNVR LRSRDRAGNVSEAGDVFSFKLDTQGPAKPAPAILANDTGDDRTDGITSNGRVVPSGPPEP GTSFEYSLDGGAWTDINVGIKGEKDGGTDGRKNVRLRTKDAAGNASDPSEVFGYTLDTKA PAKATLALVKPAVNGVTDDGTVKVANLDADARWEYSQDRGATWSAGSGDRFRVKGGIDGG GHTDGAKGVQVRQIDKAGNTTVSDVLELNLSTRFEAPTVSVTSPLKTLSDGTALLDASTG PNRTVALEVSGRRGNVAVLTRDDGTEIERKNLDANGKASFNLNRSLTVSGLKTVAGGNTT ANAVYTLLSSDEALALRNGNGGGVPFSAAYLAKGGVSIDLGKPVYSTGNAAGDWFVWSAI GGGYVISRKNDSSEWFREAPSSQPAQTPETVGAWVALNRGASQVADDLLRNNGVSTHQSR LDGVNVLNANGARDAAWRYQLKQVDAQGRISEAADLKLRMVTTAPSLLDLDAFTDGVQAS RSIVVSNADVSSASGVALMPQVATPKASDIRFIELVSDNAGASPVDSLLLDRAVGINNNL AQVDNRSIGGVTGLSYKVSTVAKKSTVTLTKTDGSAFTGDEARNVLQSLRLQNLGFDTGK KSRSVDISLGDGSGHRSADLNRVTVLTDGSGLLVDLDARQAGVQTSHTRYINSPTKLAFD AAGGERFLDNVAAPASATAEIQLRFNGLDGNKDAVLLSDNYRYSPARPNVFYGDIGGVTG VFWFLPADKPGLTVIRKQQDGALLTPAEVKAILEGIAIRCGTPPGSLERSMDITLVTATG SGTTSRATLVLDTRAPVLDLDANTPGIQIQSSKSVRLDEAITGVKLFNGEMSAPIAQDIG SLRLTLPRSGDASNDDLILGNERFATRSNIDFSGSLGGVSGLELHYAASTGQAAISRTGG APMDGLQVKAILESLKYRFASAGARNIAVEVADQAGNVARGDVTLTLDTTVPAQLTTTML AETQKAFGVAKMENIFGSPFFPITSPHNLNKGEGVALTNLPSGFANAASFLGAIRGVSAE WGGVALTGNPNSSNPNLKSYTLFNQPLNPGQEVAVMQQAGSDALGSWLSFTLVRQAGRQA DDVYLNHLGSFVLNHLDLYRSETSRDKSQSGYDLANVGLLYQIDTHRPNKTPTLQVGYDA SRAAVGDVVALFEGGTMLARKVLTAADLGSGTKTVNLTVAQSLAPGEHDIVARYTDLAGN TVNGTAQHVSVAGGGDPVTLTDLAVRSSKQAPAAVQALNASENRYAVINDLDTSDISGHS ASGPVISGKVGGGRDSDRYVVTVEMGGKVLAFDEVGAGDFSISLSAGSLAPGLYRDLTVT ASRASGNEPGQSTAVQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFVQTGAGQ DKVIVGAFGRSDNLAATVGDFVLGVDKVEVFNQSLTQANLSRFVTASAGVNPNDTRLSID LDGAGPGTLTYTLMLQNVAYNSANTATIFGL