Protein Info for HSERO_RS22475 in Herbaspirillum seropedicae SmR1

Annotation: 3-oxoacyl-ACP reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 PF00106: adh_short" amino acids 20 to 207 (188 residues), 151.6 bits, see alignment E=3e-48 PF08659: KR" amino acids 22 to 183 (162 residues), 23.9 bits, see alignment E=5.3e-09 PF13561: adh_short_C2" amino acids 29 to 260 (232 residues), 176.1 bits, see alignment E=1.3e-55

Best Hits

Swiss-Prot: 63% identical to XDH_CAUVN: D-xylose 1-dehydrogenase (xylB) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4497)

Predicted SEED Role

"D-xylose 1-dehydrogenase (EC 1.1.1.175)" in subsystem Xylose utilization (EC 1.1.1.175)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.175

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWS6 at UniProt or InterPro

Protein Sequence (263 amino acids)

>HSERO_RS22475 3-oxoacyl-ACP reductase (Herbaspirillum seropedicae SmR1)
MTAATTPAFEHALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIAAEPSQALV
ASLKDAPIAPRFFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHKTADVTPAYW
DERLAVNLRHQFFCAQAVLPGMRERKQGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTH
GMARDFGRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPTRVDPHDVAALALF
LSSDSGAKCTGREYYVDAGWLGA