Protein Info for HSERO_RS22320 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1090 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF16640: Big_3_5" amino acids 64 to 145 (82 residues), 61.6 bits, see alignment 1e-20 amino acids 156 to 239 (84 residues), 65.8 bits, see alignment 5.1e-22 amino acids 249 to 331 (83 residues), 71.5 bits, see alignment 8.5e-24 amino acids 340 to 424 (85 residues), 69 bits, see alignment 5e-23 amino acids 433 to 517 (85 residues), 68.4 bits, see alignment 7.7e-23 amino acids 534 to 608 (75 residues), 60.2 bits, see alignment 2.8e-20 PF01833: TIG" amino acids 613 to 692 (80 residues), 42.7 bits, see alignment 6.9e-15 PF03797: Autotransporter" amino acids 818 to 1068 (251 residues), 135.6 bits, see alignment E=4.2e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4466)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVX4 at UniProt or InterPro

Protein Sequence (1090 amino acids)

>HSERO_RS22320 hypothetical protein (Herbaspirillum seropedicae SmR1)
MDGAVTLGTVAVSSYAASLNISTLAPGSHALTAIFDGDATSSAPLTVTVAAATPTLSLGS
SASAISYGGHLLFNAALSNGYAPSGSIEFHEGGAVLGAATLSGNTATLSLGNLTAGAHLI
TASYAGDGNNAAASSAALTVSVSPLSPTLSVSTSSNAIVYGATPTVTATLNGGLSPGGTI
LFKDGSATIGTIALSGNSASLPLPGLSVGSHAISAVYSGDSNHNSATASATTLTVGQVSS
TVVLNASTSNTAFGTPVTLTATVGGSLPSGTVSFTDGGVVLGSAIVSGGVAVFSTRTLVI
GTHSLEAQYGGDSNNAAASSAVATVTVTPRTPALTLSASSTSVSYGATLILNATLTGGAA
ATGLVRFTEGGVTLGATSLLAGAASLSLGRLAPGAHIIRASYAGDSNHAAATSSAITVTI
NKVAATVTLSATPASASLGSNVTFNAVISGSSGSLPGGSVVFREGGTTLATVNVVAGAAS
FSMSTLALGSHTITAHYSGDSNNASANSSGVVVGIGRSTPTLSLASSASALNEQAPLTLT
ATVAGGIAPTGTVSFMDGAAILGTVSLSGQRASLTLNTLTLGSHHLSAVYNGDSNNNSTR
STSVSVAVLSIRPAVTGVTPASGSALGNTRVSISGLRLAGASAVSFGGSAAPIVSSSETE
LVVLTSAHTAGTVDLVVTAASGTVTVAGGFSYATLADPASSTAVSAMVRAQTQAVQRFAT
AHLANFTQRLEALHGEGAAPSSFGLSFGQTNDPRREPSTWARGGDIVNYRDSELAYLRAG
LRNTALAASSTASTSGADDQLPELPQVSEAVSRGDIAWWISGALDLVNQKDSAGQSSARL
ATSGVSVGGDYRISRTLTLGMGAGYSLSTYRADDDSASSRSQGVMGVLYASTRPADDLYV
DVLAGYGVLRFDLSRYIADTGVLAAGSRTGRQVFASTTMGYEWRGQDWLVSPYVRLDLAR
ATLDRYSESGGAGALSYFSQSLRNDAAYLGMRAQFDVTLPVGLLTPQARVAYQRSLQAAG
TATMRYADPSLSSPLYSYSDGVQDSRQWLLTLGGRLLLKNGLALMLLYAHNAANAMTTSQ
SLNFQVSGRF