Protein Info for HSERO_RS20370 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 123.3 bits, see alignment E=1.2e-39 PF13304: AAA_21" amino acids 116 to 190 (75 residues), 35.4 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 100% identity to hse:Hsero_4073)

Predicted SEED Role

"ABC-type multidrug transport system, ATPase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITB3 at UniProt or InterPro

Protein Sequence (303 amino acids)

>HSERO_RS20370 ABC transporter ATP-binding protein (Herbaspirillum seropedicae SmR1)
MAALQINDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGTV
TIHGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENL
DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNR
EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRGSLPEG
LKSLVTHPEELLSGNKYTLRVNDYQEVEPILAALRAAGAEIDDLQLQQADLEDVFIQIMG
DEK