Protein Info for HSERO_RS20130 in Herbaspirillum seropedicae SmR1

Annotation: type VI secretion protein VasK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1266 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 54 (19 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 15 to 1215 (1201 residues), 697.4 bits, see alignment E=2.1e-213 PF14331: IcmF-related_N" amino acids 188 to 444 (257 residues), 284.2 bits, see alignment E=1.9e-88 PF06761: IcmF-related" amino acids 493 to 844 (352 residues), 251.5 bits, see alignment E=2.7e-78 PF21070: IcmF_helical" amino acids 1001 to 1087 (87 residues), 35.9 bits, see alignment 1.5e-12 PF06744: IcmF_C" amino acids 1113 to 1216 (104 residues), 97.9 bits, see alignment E=7.6e-32

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IST2 at UniProt or InterPro

Protein Sequence (1266 amino acids)

>HSERO_RS20130 type VI secretion protein VasK (Herbaspirillum seropedicae SmR1)
MQRLWKILSDTRVLTLLGFMALAAVLFIGAEQLELAPIWPAVLFCALLLAWLALRRYQRW
KAQRAATKLENVLEQQAAQPLPVDSEAARHDDVAALRQRMLEAINTIKTSKLGQKSGAAA
LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT
AGRYSVYEEDRREWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR
VQELTEKLEVFAPVYVVFTKTDLITGFNEFFLDSERGERDRVWGATLAYDRKHSGQEVSN
FFDERFDELYAGLKEMSLANMAVKRGENLAPGVLTFPLEFSAFKGVLRSFVTTLFEENPF
QFKPVFRGFYFTSALQEGATLGASAQRIADRFGLTLEDQPQREVLSKQGFFLHNLFKQVI
FADKQLVAQYTSRNKIRMRYLTFFAALAMLGALLGGWSWSYMGNRQLVANVQADMDKAIK
LQEKRLDLQSRFEALEILQDRIEQLDRYRSHRPVSIDLGLYQGDLLERKLREEYFAGIKE
IMLKPVASSIENYLIEVNANSSKLEPMSRPPQADSLATTGDNNIHAGNALRTYKDSSATN
VEDAYNALKTYLMLSDKSRAEASHLNDQITRFWRGWLETNRGTMPREQMIRSAERLISFS
LEQIDDPSWPTTENKLTLVDQTRENLRHVVRGMPARERVYADVKARAATRFASMTVARIV
GDKDRELVMGSYAIPGTFTRNAWEKFVEDAFKEAANKELQSADWVLKTSSKEDLTLEGSP
EQIQKALVSQYKSEYAREWQKFLQGVSIVELHNLDDATNAMNRLGDPLTSPINKVISTVY
DETSWDNPSLIGSGLATASRGLSGWFKETVLRRSPAPPPAPPQLNTDGGAAIPMGPVARE
FAGVARLVVSKDKGNSLMRGYMENLSKLRTRLNTIKNQGDTGPGAKQLMQQTLDGSGSEL
SDALKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGFNALVHPTEGELNKIWRAQVYEPFQN
NLATKYPFSPSSKIEANSGEINTVFGESGAISKFVTTAMGPLVVRRGDTLSPRKWADMGI
TLSPAITTSFADWISTHGSTGAGGGAGDAQTVFQIQPQPAPGALEYTIEIDGQQLRYRNT
QAQWVNFVWPNPQGSPGARVTAVTYDGRTVEVASQPGRFGLERLINTAQRKRKDNGAFEL
SWTNEGVTVMVSLKIISSAEVSGNGSGTARGTAGLRGLKLPETIAGGGSALQAQPQTLTT
TTGATQ