Protein Info for HSERO_RS19625 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 165 to 187 (23 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details amino acids 340 to 358 (19 residues), see Phobius details amino acids 370 to 390 (21 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 324 (302 residues), 49.4 bits, see alignment E=3.3e-17 PF06779: MFS_4" amino acids 23 to 388 (366 residues), 349.3 bits, see alignment E=3.1e-108

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3930)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISI6 at UniProt or InterPro

Protein Sequence (401 amino acids)

>HSERO_RS19625 MFS transporter (Herbaspirillum seropedicae SmR1)
LPRSPAQRNRLSWKVCLAGMVALSVAMGIGRFAFTPLLPLMLHEGSLNLQMGGWLATANY
LGYFVGAMACAVHRSKRGVRMLRIGLVATILLTLGMGLLQWNWLWLLMRFLSGVASAYVF
VYTAGWCLHQLTQLQRPELGGVIFCGPGLGIALTGLLTGPMISAGWVAAGGWIAYGIIAL
GLTALVWQTFRFDAGQGQASAATTTTDASAQESPRQKREVTVQVIAYGIAGFGYIITATF
LPVIARQALPGSAWPDYFWPIFGLSVAAGAFSATRFSVHTDQRLLLTAAYLMQAAGVLLS
ILFPNAWGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPL
ATSLVHASGSFTPSLCVAAITLIIGAALYYRLTRTHRLPIH