Protein Info for HSERO_RS18335 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 63 to 70 (8 residues), see Phobius details amino acids 83 to 110 (28 residues), see Phobius details amino acids 131 to 164 (34 residues), see Phobius details amino acids 199 to 223 (25 residues), see Phobius details amino acids 244 to 266 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 101 to 271 (171 residues), 96.3 bits, see alignment E=9.3e-32

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to hse:Hsero_3674)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IR26 at UniProt or InterPro

Protein Sequence (283 amino acids)

>HSERO_RS18335 ABC transporter permease (Herbaspirillum seropedicae SmR1)
MWKLFKPNHKNIRFWQLMVLAIVLVVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS
LEVGIGDTTFFTLSFPAEIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTASAILDP
YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR
MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTF
DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL