Protein Info for HSERO_RS17170 in Herbaspirillum seropedicae SmR1

Annotation: mammalian cell entry protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 transmembrane" amino acids 25 to 49 (25 residues), see Phobius details amino acids 123 to 138 (16 residues), see Phobius details PF02470: MlaD" amino acids 52 to 143 (92 residues), 49.6 bits, see alignment E=2e-17 amino acids 167 to 227 (61 residues), 37.2 bits, see alignment E=1.4e-13 amino acids 298 to 399 (102 residues), 42.9 bits, see alignment E=2.3e-15

Best Hits

KEGG orthology group: K06192, paraquat-inducible protein B (inferred from 100% identity to hse:Hsero_3428)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPL1 at UniProt or InterPro

Protein Sequence (542 amino acids)

>HSERO_RS17170 mammalian cell entry protein (Herbaspirillum seropedicae SmR1)
MTPPDTPEDKPALLQPRRTRQRNWLPSLVWLIPIIAAVVGLSLVAKILIDRGPLVTVTFR
SAEGLEAGKTRVKYKDVEIGQVQTLKLAPDRSHVLVGIQLNKEAAGFDAEDTRYWVVRPR
IAASGISGLGTLLSGAYIGADPGASEQSKKSFVGLEQPPIVTRDASGRQFVLHTNDLGSL
DIGSPIFYRRIKVGQVVAYDLDADGRGVTLRIFVNAPYDKFVTQTSRFWHASGFDMELNA
SGFKLHTQALATVVLGGIAFRDRDEDRVSAPAKEGAEYALVEDESAAMKEPDGVPQTALL
YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDKARGEFRMPVVVQIYPERLGRRFQEET
GEQRRSNAHLLRTLVKRGLRAQLRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPLELPTI
PGSLDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLSTAEQTAARINNDIAPEMQ
AAMKDARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQ
EP