Protein Info for HSERO_RS16910 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 44 to 60 (17 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 44% identity to hse:Hsero_1456)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (154 amino acids)

>HSERO_RS16910 hypothetical protein (Herbaspirillum seropedicae SmR1)
MSTLNVVPDSPAATPYLAKARYLIVAGWVLFMISLGLPLQNNDLGYVALLYSFVFLTSIV
ERPDPQLIWMGSYALVNTGLIASLFMTRKGRLISHPGCSLFFALAALDTFFAPLFAKEFS
QYPAFWCWSASAILVAAGMNLARLRQQDHLGARH