Protein Info for HSERO_RS16490 in Herbaspirillum seropedicae SmR1

Annotation: FimV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 896 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 553 to 573 (21 residues), see Phobius details PF01476: LysM" amino acids 291 to 345 (55 residues), 21.2 bits, see alignment 1.1e-08 TIGR03505: FimV N-terminal domain" amino acids 297 to 369 (73 residues), 85.3 bits, see alignment E=2e-28 TIGR03504: FimV C-terminal domain" amino acids 852 to 895 (44 residues), 59.3 bits, see alignment 2.8e-20

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 99% identity to hse:Hsero_3295)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1Z3 at UniProt or InterPro

Protein Sequence (896 amino acids)

>HSERO_RS16490 FimV (Herbaspirillum seropedicae SmR1)
MPLNTNKKPHLSQIKTLSAAVALALAVPLGAQAASLGKLTVLSALGQPLRAEIEVTAVSA
EEAGKLSAKLAPAEAFRRANVDYNPVLGSLSFAVEQRQGRHFIRISSSQPVSDPFVDLLL
ELSAGDSRLIREYTFLLDPADSKSPRNAQVAPLTPSNAVGAAAKGEAAAAPAAPAAAAEP
APAPAAATQAAAAAAPAPAAASASTTAAPAAAAPAAPTSSAPIPVSSEEPASNIVQRPAP
SALAEELIRRQQAAPDSTPASASPSAAAPAAPVQGATGQAAAAPAGKTGDYRVKPGDTLA
GIAARNQQANVSLDQMLIALYRANPDAFMGNNINRLRAGKILSIPDQPTAAAVDQTEARG
MVVAQAQDFNAYRNKLAGQVASAPAGKPGASRQSGGGKITTRVEERSGAQEARDRLELSR
ANKGRGKTGNAGAAAAEDKAAAERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLSAQ
QKEAKPESPAAAAPAANAEVKPAEGATPAADAPAAAAPAPAPAPAPAATPPMAAKPAEKS
GGSFVDKIKENPYVLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVEPEPASVPEP
EPVAAAVAAEPEPPVSAEPAVEAVAEPVAVAETVAEEAPVDPITEADMYIAYGRDEQAED
ILKLALQTQPERQALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWVKAAALGLEI
DPTNPLYGGQPEPEPEPEPEEAGMEFDLDDFKSAEIRADATPAPAPMDLGKDIDFDLDLE
NGAKPDADEPLLPASTAAASASTLLDSLDDQPQASSLSDLDLSLPDEASAPPSATNLLEE
DEESAFEAEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKQMMAGLG