Protein Info for HSERO_RS16430 in Herbaspirillum seropedicae SmR1

Annotation: FabD/lysophospholipase-like esterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF01734: Patatin" amino acids 8 to 203 (196 residues), 91.2 bits, see alignment E=5e-30

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 100% identity to hse:Hsero_3283)

Predicted SEED Role

"Ferredoxin reductase" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1Y1 at UniProt or InterPro

Protein Sequence (338 amino acids)

>HSERO_RS16430 FabD/lysophospholipase-like esterase (Herbaspirillum seropedicae SmR1)
MSNKIISLALQGGGSHGAFTWGVLDRLLEDGRLGFEGISGASAGAMNAVVLAQGYVQDGR
EGARAALERFWTALSTGAPLDYINAEGAPVIANPTPMPGMQALLAMTRFFSPTQLNPLDI
NPLRDILLEQVDFDRLRRQRELKLFIAATQVSTGTLKIFRNADLSVEALLASACLPSLHR
PIEIEGEAYWDGGLTANPPIFPLLHACAARDVMVVLLHPSRRAGTPTSTHDIGQRLSEIS
FSSAFFTELSALALAKREAENSTLAFGSLERRLRQLNMHMIDANELMEQLTNLSKLNTQA
SFIGSLFQQGRERAAEWLEQNFAQVGHASTFDLGRFLP