Protein Info for HSERO_RS16370 in Herbaspirillum seropedicae SmR1
Annotation: peptidyl-prolyl cis-trans isomerase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 41% identical to SLYD_YERPE: FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (slyD) from Yersinia pestis
KEGG orthology group: K03775, FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC: 5.2.1.8] (inferred from 100% identity to hse:Hsero_3272)Predicted SEED Role
"FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)" in subsystem Peptidyl-prolyl cis-trans isomerase or Potassium homeostasis (EC 5.2.1.8)
Isozymes
Compare fitness of predicted isozymes for: 5.2.1.8
Use Curated BLAST to search for 5.2.1.8
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See D8J1X0 at UniProt or InterPro
Protein Sequence (180 amino acids)
>HSERO_RS16370 peptidyl-prolyl cis-trans isomerase (Herbaspirillum seropedicae SmR1) MKIAKNTVVSVNYKLSDAQNNLIEQSSEPMVYLHGGYHNTLPKIEEALDGKEAGYSTTIQ VEPEDAFGEYDSELVKIEPVERLPQPLEVGMQFEGSPDDDSEESVIFTVTEVADGKAVLD GNHPLAGIALRFELAVTEVRAASEEEVSHGHVHGPHGHHHHHHDEDEGEAGDHFRSQPLN