Protein Info for HSERO_RS16265 in Herbaspirillum seropedicae SmR1

Annotation: filamentous hemagglutinin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2685 transmembrane" amino acids 49 to 68 (20 residues), see Phobius details PF13018: ESPR" amino acids 1 to 50 (50 residues), 44.8 bits, see alignment (E = 2.7e-15) PF05860: TPS" amino acids 72 to 333 (262 residues), 207.9 bits, see alignment E=5.1e-65 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 111 to 207 (97 residues), 74.8 bits, see alignment (E = 1.9e-25) PF13332: Fil_haemagg_2" amino acids 1400 to 1549 (150 residues), 36.4 bits, see alignment 1.1e-12 amino acids 1482 to 1638 (157 residues), 30.1 bits, see alignment 1e-10 amino acids 1573 to 1647 (75 residues), 15.7 bits, see alignment (E = 2.8e-06) amino acids 1751 to 1924 (174 residues), 141 bits, see alignment 8.2e-45 PF04829: PT-VENN" amino acids 2273 to 2324 (52 residues), 67.3 bits, see alignment (E = 2.2e-22)

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1G3 at UniProt or InterPro

Protein Sequence (2685 amino acids)

>HSERO_RS16265 filamentous hemagglutinin (Herbaspirillum seropedicae SmR1)
MNQLCYRIIFNKTRGLLMAVAETTRACAGKRAVGSRPGVALGGLPMARLSWIGLAVLLAT
GALVTTMPRAYAQIIADPNAPRAQQPVVVNTANGIPQVNIQTPSAAGVSRNTYSQFDVNR
AGAILNNSRSDVQTQLGGWVQRNPNLANGTARVILNEVNSSNPSMLRGFVEVAGDRAQVI
IANPSGVTCDGCGFINASRSTLTTGTPIINNGSLDGYLVRGGVVSIKGNGLNDSQSSFTD
LIARAAKINAGIWSKELKVTVGTNQVNADNTTVTAVSADPAKPQFGIDVAQLGGMYANKI
VLVGTESGVGVRNAGAIGAAAGELTLTAAGRIENSGSLAATASLGVRATGQGGDIVNSGS
VASSAAAVKLQADGGINNSNTISAQSGVTLTAASLQNSGAISAATGNVEVDTHGAVNNSG
KVQAAGDISISATQPQGNAAADISNTGNIEAAGQLGLTADGMLSNDGSITAQSIRAGVQG
LRNNGSIGTRSNAAFTLQQGLVQGANGRLSAVSDLNLTMQGDYDNAGRVQANTLTLSAAN
IGNRSGAALQAADITLTALNRLDNAGEISANRQLNITADSILNSATILGKDLVVNARTLE
NTGANALLGAGNGMSLWLTEMLANRGKAIIYSSADMAIAANGVRDANGLVNNTAQIVNED
SVIEAGGNLDIAAVNVRNTRSGVAVTTVRTLDETYAMRAPSWWHNGGNQMYYKPDSSNFN
FYEMLYVNPADVLETKSIITPDGYVIGRAVIRTHADDTVFYKGLSSNWATFGQVTRGSAT
DGTRVVYFTEQRNNVSNPDKVAGGDDPRNGRGDVNWQPMPGYSNQYGNCTTNCVRFVAEV
DYTDPNGIFRRDTQRALAPQHDSLELTRNAHHTASEDRLAAGAGAVAEIRAGGNANIRIA
QSLNNEFSNIVVSGALWLGGGNADINNLGQTLYRRHSFDGNFVTTGGTVTGYSMPDISEV
IGTTQGAIVGKQGVNIMARNFSNADIAAGSAANIRSDLTLTTGSGQSVGSVLNDASARPG
ATAPDAPVPVRPNPMFVPATSGNYLLETRTQFTDRRTWLSSDYLLTALNVDPSTTQKRLG
DGFYEQRMVREQMAQLTGRPSGSFNDDSQYQKLLNNAVSVAQSWNLRPGVALTPDQVSHL
TSDIVWLETQKVVLPDGRTEEVLVPKLYLAHIDKDALKNSGALVSGDNITIQAENISNKG
GFIDGRASGTGRTVLVASNDIANLGGGISGDEIVISAGRNVRNETLTTTQTYNNGQTSGS
YTSLSNQGSIAADKNLTITAGADITNLGATVASGRSGDAATGKLSMSAGRDINLGTVKTG
STYDANFSGYFGHAQSVSSVGSTVNAGGDLTMVAQRDLSLTAAQVAIGTNGSGNGSLMAG
RAVTIGAALDRAESTIGRAASRSYSRADDESVAVRGSNIDAAGGISIKAGLMEKADVKVA
ASSITAGKALEVAATGDINVVSEESFQSHSEYAKSTSRGLLSSTTRTSYGKRAYTNAVGS
TLSGDTTVLQAGKDMSIVGSNVVSSAGTSLVAANNITVASASDKVESAEGSNKKSSGLLS
GGGLGFTIGTRELDNKNTTVNSTAVSSNVGSIDGNVSIKAGNAYTQSGSNVLAPKGDIDV
VAKQISILAAAETERSTQDMVFKQSGLTIQITSPVLSAIQTAQQMAQAAKSTSGGRMQLL
AAANIGFAGKNAVDAVRTGQGFAVDGKDNPQVRTNALDENGDLKLGADKKPETRDATAAD
KAGGINLAISVGASKSENHSQSSASTARGSTLNAGGNISLTAQGGGADSNVIVQGSDIRS
GANTLLKADNEVRLLAAQSTTEQSSSNKAMSGSVGISIGTDGFLVNAGLSGSRGRGDGSD
VAQVNTHVDAGNKLTIASGTDTTIKGAVASGKQVVIDVGTSGSGNLNIESLQDTSTYKSR
QQSAGVSISAGMGRMSGSLNLARSSVDGNYASVNEQSGIKAGDDGFQINVAGNTDLKGAK
IASTDKAAADGKNSLTTETLTQSDIKNRSDFKAESQSVGMGTNLAGSVLGLAGSALGRGN
VSGSDSSTTRSGISQADIKITDDAAQQAKTGKTAEQTIASINADVSSERDTSGKIAKTWN
GQELQADVEAQAEITRAFGQQVAQLAGAYAESKEKELRQAASNAAQNGDQTQALLLGAEA
DQWKDGGENKRALKAITTLVIGGLGGQSAGQLLANASAPYLADAIGRYFSQPGNENKSAQ
VLSHAILGGILASANGAHAGAGALAGATGELAAEAITRELYPDAYDADGKFHPEKLNDNQ
RKTVIALSTVAGTVLAGIAGGTPLDAAIGGNISENAVTNNFLGDKTNAKRNEALAKLKKA
YNQSFLDKLVNPVKGRSESAQVLLALNYLDNRSDQLLSAYHANPDSLSSAEKNELFLYIA
YYAQQNGSAAAQFLLKAGPGSSVQPADVPELALFARQLQSIQDVHQAQAAIGSPALEVMS
GPVGDLIRLVAMAQAGYQLGTGVEELRNGDQAGLENVAVGLLSAAGTALNQAAAINPSGA
TRGRSGPIDGAGAAVNAPNTIPYQPTGSVIRQGDAPVCGPACAAMTITDNTGASVTLENV
IGSFEKGIRPSGVNTAELSDVISKAGVKNTVNLNMFPGELNRALADGKTVIVNVNNHFFI
VDSVAKVDGVLYYMTRDPSAGPRGVRASILDNAMKNSANSIVIGK