Protein Info for HSERO_RS15595 in Herbaspirillum seropedicae SmR1

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 84 to 100 (17 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 267 to 289 (23 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 330 to 351 (22 residues), see Phobius details TIGR04407: LPS export ABC transporter permease LptF" amino acids 2 to 348 (347 residues), 389.5 bits, see alignment E=5.5e-121 PF03739: LptF_LptG" amino acids 6 to 343 (338 residues), 177.2 bits, see alignment E=2.5e-56

Best Hits

KEGG orthology group: K07091, lipopolysaccharide export system permease protein (inferred from 100% identity to hse:Hsero_3108)

Predicted SEED Role

"FIG000988: Predicted permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0N6 at UniProt or InterPro

Protein Sequence (376 amino acids)

>HSERO_RS15595 permease (Herbaspirillum seropedicae SmR1)
MIFQRALRRELTSTAGGVFTTLFTITLTVMLIKILGQAAGGQVASQDVIALIGFQSLNYM
PIILILTGFISVLLVMTRSYQDSEIVVWFACGMSLTRWIAPVLRFGWPIVALVAALSFVA
TPWANQQSSEYRSRFEQREDIARVSPGKFQESAAANRIFFVEGISGDASKVRNIFVNTIG
ADGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQN
AAGERSARALQMNELVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNPRAGRSLGL
LVALLLFVVYSNTVSVFQASVAQGRATFMMAWWPVHVVVVLLIVGMFALRLNINHPYHPS
RLWSRVRRAMTFQREA