Protein Info for HSERO_RS15325 in Herbaspirillum seropedicae SmR1

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 30 to 51 (22 residues), see Phobius details amino acids 64 to 86 (23 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 210 to 285 (76 residues), see Phobius details amino acids 305 to 313 (9 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details PF01594: AI-2E_transport" amino acids 12 to 337 (326 residues), 161.9 bits, see alignment E=1.1e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3054)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0I6 at UniProt or InterPro

Protein Sequence (374 amino acids)

>HSERO_RS15325 permease (Herbaspirillum seropedicae SmR1)
MLGFDLRVARIVWTVFLVALLLYVTYTISATVLVLVFAVFFSYLVYPLVELIERVRPPRV
PRTVSIALVFVLAIAIVATVATIFGARIQEEALRLSEQLPALLRSNDAVSRLPLPGFAEP
LRARILGFVRDQLAAGTDQAMPLAKQFGVGVMHAASNLIYLVLVPVISFLLIKEAPAMRE
EMLSWMSRANRKLWDGIVTDLDVLLSRYVRALLFLSVATFVAYSIAFSLMGVPYAMLLAG
LAAVLEFIPFAGPLAASAAALVVAGFSAYDHLLWLVGFIVAYRVFQDYVLNPYLMSEGVE
VSPLMVILGLLAGDQLGGVAGIFLSVPVMAALKIIFTRASAAQKARRASEARQAELAAQE
ALRTEPPPPTGSAS