Protein Info for HSERO_RS14870 in Herbaspirillum seropedicae SmR1
Annotation: ATPase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 46% identical to ZAPE_ECO57: Cell division protein ZapE (zapE) from Escherichia coli O157:H7
KEGG orthology group: K06916, (no description) (inferred from 100% identity to hse:Hsero_2966)Predicted SEED Role
"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See D8IZW4 at UniProt or InterPro
Protein Sequence (365 amino acids)
>HSERO_RS14870 ATPase (Herbaspirillum seropedicae SmR1) MDVRQFYEQSLSQRGYQPDEAQLRAIERLQRAYEEWVAYKAQRASTFKRLISRPAVPRGV YMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMRDVHRQLDELKGIADPLDEVAKRIA KKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSFVMTSNYEPSTLYPDGLHRDRMLPT IALLKEKLDVMNIDAGIDYRKRVLEQVKVYHTPLNAKTDEELRAAFAAVAEATEEDPRVH IEAREIRALRRAGSAIWFDFATLCGGPRSQNDYLELASRFQTVILSGIPRMSAAMSSEAR RFTWLIDVFYDHKVKLIMSAAVEPDELYTVGTLSNEFHRTVSRIIEMQSKEYLDADRRSI ADSLS