Protein Info for HSERO_RS14110 in Herbaspirillum seropedicae SmR1

Annotation: protease TldD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 PF01523: PmbA_TldD_1st" amino acids 27 to 89 (63 residues), 28.4 bits, see alignment E=2.3e-10 PF19290: PmbA_TldD_2nd" amino acids 118 to 226 (109 residues), 45.2 bits, see alignment E=1.9e-15 PF19289: PmbA_TldD_3rd" amino acids 234 to 467 (234 residues), 229 bits, see alignment E=6.1e-72

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2814)

Predicted SEED Role

"TldD protein, part of TldE/TldD proteolytic complex"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYX2 at UniProt or InterPro

Protein Sequence (469 amino acids)

>HSERO_RS14110 protease TldD (Herbaspirillum seropedicae SmR1)
LLAASGLDESQLLAGVSRALRKGGDYADLYLKSSVAESWHLERGKVTRSNYNQSQGFGLR
LVEGEQSVLTSADRFDATTIGKAADLAADAVGHAPVSPAGLVLKLPKRGPTYYTLDDPLP
SLDAAHKIALLESVDRACRARSPLVVEVMASLSISLDLVFLARNDGYCGGDVRPLVRLDV
AVQVVRNGRREGASRTLGGRVGLATFDHAAIESVAALAVDAALIKLEARAAPAGTMTVVI
GPGWNGVMLHEAVGHGLEGDFNRRGSSAFAGRIGQRVAAPGVTIVDDGTVPGSRGSLNID
DEGTPGQCTTLIEDGILVSYMQDSLNARLMGVANTGNGRRESYDVLPMPRMTNTYMRAGG
VDPAEIIASVKQGIYIAHLEGGQVDISSGRFMFAASEAFLIENGRLGAPVKGATVLGNGP
QSLKNVKLIGNDLEINTASGVCGKAGQSVPVGVGQPTLRIDGMTVGGTA