Protein Info for HSERO_RS13415 in Herbaspirillum seropedicae SmR1

Annotation: VdlD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 PF03061: 4HBT" amino acids 23 to 97 (75 residues), 65.7 bits, see alignment E=2e-22

Best Hits

Swiss-Prot: 43% identical to Y535_CHLTR: Uncharacterized acyl-CoA thioester hydrolase CT_535 (CT_535) from Chlamydia trachomatis (strain D/UW-3/Cx)

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2675)

Predicted SEED Role

"cytosolic long-chain acyl-CoA thioester hydrolase family protein" in subsystem Serine-glyoxylate cycle

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXR9 at UniProt or InterPro

Protein Sequence (159 amino acids)

>HSERO_RS13415 VdlD (Herbaspirillum seropedicae SmR1)
MDLPSHQLTMTVLMTPDMANFAGNVHGGTILKLLDQVAYACGSRYAGQYVVTLSVDQVMF
RQPIHVGELVTFLASVNHTGKSSMEIGIKVVAENIRTQETRHVNSCFFTMVAVDDQRKPI
PVPPLRPFSQEEKRRFEAAVIRKSLRQELARRYDEVKPG