Protein Info for HSERO_RS13175 in Herbaspirillum seropedicae SmR1

Annotation: urea ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 TIGR03411: urea ABC transporter, ATP-binding protein UrtD" amino acids 15 to 255 (241 residues), 380.6 bits, see alignment E=1.7e-118 PF00005: ABC_tran" amino acids 32 to 185 (154 residues), 100.8 bits, see alignment E=1.6e-32 PF12399: BCA_ABC_TP_C" amino acids 232 to 255 (24 residues), 33.6 bits, see alignment (E = 3.5e-12)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 100% identity to hse:Hsero_2632)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXM6 at UniProt or InterPro

Protein Sequence (255 amino acids)

>HSERO_RS13175 urea ABC transporter ATP-binding protein (Herbaspirillum seropedicae SmR1)
MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDL
ICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRK
VFGALTFKRSPDVVARVEAVAAEIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLML
DEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME
KVQSDPKVIDVYLGH