Protein Info for HSERO_RS13170 in Herbaspirillum seropedicae SmR1

Annotation: urea ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 TIGR03410: urea ABC transporter, ATP-binding protein UrtE" amino acids 3 to 229 (227 residues), 326.8 bits, see alignment E=3.3e-102 PF00005: ABC_tran" amino acids 18 to 158 (141 residues), 112.8 bits, see alignment E=2e-36

Best Hits

Swiss-Prot: 36% identical to LPTB_HAEIN: Lipopolysaccharide export system ATP-binding protein LptB (lptB) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K01996, branched-chain amino acid transport system ATP-binding protein (inferred from 100% identity to hse:Hsero_2631)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtE" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXM5 at UniProt or InterPro

Protein Sequence (229 amino acids)

>HSERO_RS13170 urea ABC transporter ATP-binding protein (Herbaspirillum seropedicae SmR1)
MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI
DGVELGSLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAAKGKVPDELYSLFPVL
YDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIR
ALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV