Protein Info for HSERO_RS13015 in Herbaspirillum seropedicae SmR1

Annotation: DNA polymerase III subunit delta'

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 TIGR00678: DNA polymerase III, delta' subunit" amino acids 19 to 225 (207 residues), 212.4 bits, see alignment E=2.1e-67 PF13177: DNA_pol3_delta2" amino acids 24 to 192 (169 residues), 141.8 bits, see alignment E=2.1e-45 PF00004: AAA" amino acids 31 to 189 (159 residues), 22.9 bits, see alignment E=1e-08

Best Hits

KEGG orthology group: K02341, DNA polymerase III subunit delta' [EC: 2.7.7.7] (inferred from 100% identity to hse:Hsero_2600)

Predicted SEED Role

"DNA polymerase III delta prime subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXJ4 at UniProt or InterPro

Protein Sequence (345 amino acids)

>HSERO_RS13015 DNA polymerase III subunit delta' (Herbaspirillum seropedicae SmR1)
MSLTSSDVLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPE
AHACGVCASCNWFSQSNHPDYRRVRPEVLDDETADDEAGEEKKTAKASKAPSKDIKIDQI
RALADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLP
TILSRCRKFALSAPGHGEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGREALDEL
LRHLAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRL
AERVDALALSRALRGMGDRRAIADHPLSAKLFIEEMLIDYAGLFD