Protein Info for HSERO_RS12990 in Herbaspirillum seropedicae SmR1

Annotation: aankyrin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF12796: Ank_2" amino acids 39 to 129 (91 residues), 43.2 bits, see alignment E=1.2e-14 amino acids 71 to 157 (87 residues), 68.5 bits, see alignment E=1.5e-22 amino acids 161 to 217 (57 residues), 28.4 bits, see alignment E=4.9e-10 PF00023: Ank" amino acids 100 to 128 (29 residues), 26.6 bits, see alignment 1.4e-09 amino acids 131 to 159 (29 residues), 31.1 bits, see alignment 5e-11 amino acids 165 to 196 (32 residues), 19.4 bits, see alignment 2.6e-07 PF13606: Ank_3" amino acids 100 to 128 (29 residues), 19.4 bits, see alignment 2.8e-07 amino acids 131 to 157 (27 residues), 26.4 bits, see alignment (E = 1.4e-09) PF13637: Ank_4" amino acids 102 to 151 (50 residues), 36.6 bits, see alignment E=1.1e-12 amino acids 166 to 206 (41 residues), 25.2 bits, see alignment 4e-09 PF13857: Ank_5" amino acids 157 to 205 (49 residues), 28.7 bits, see alignment 3.4e-10

Best Hits

KEGG orthology group: K06867, (no description) (inferred from 100% identity to hse:Hsero_2595)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXI9 at UniProt or InterPro

Protein Sequence (223 amino acids)

>HSERO_RS12990 aankyrin (Herbaspirillum seropedicae SmR1)
MTLLEKLRLRCRGLGRIVLYTSLLLPGAARAGAYEEYFQAIRMDNVYFLKQLMQRGMGPN
LIEPKRGYTGLMLAIREDSMKAFDVLVNAPDVNLEAQATNGDTPLMLASFYGNAPVVKLL
LAREVEVNRPGWTALHYAAINGSSEIVKLLLDASAYVDCESPDDKMTPVMLAAMRGRVAA
VEVLRDNGADLSLKNKDGLTAMDLAKRYGQDGVIDVLNQKPRQ