Protein Info for HSERO_RS12660 in Herbaspirillum seropedicae SmR1

Annotation: pirin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 PF02678: Pirin" amino acids 37 to 135 (99 residues), 119.5 bits, see alignment E=7e-39 PF05726: Pirin_C" amino acids 190 to 297 (108 residues), 111.1 bits, see alignment E=3.2e-36

Best Hits

Swiss-Prot: 44% identical to Y3769_VIBCH: Putative quercetin 2,3-dioxygenase VC_A0969 (VC_A0969) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K06911, (no description) (inferred from 100% identity to hse:Hsero_2532)

Predicted SEED Role

"Pirin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWL1 at UniProt or InterPro

Protein Sequence (297 amino acids)

>HSERO_RS12660 pirin (Herbaspirillum seropedicae SmR1)
MRREPARRMSMSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHS
DEPSDYLAGFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSEL
PEQENGLMSGFQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGA
IRRATTEPLYLDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVL
SNVPGSAGVTVRAEQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRAGRF