Protein Info for HSERO_RS12150 in Herbaspirillum seropedicae SmR1

Annotation: iron-regulated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details PF03929: PepSY_TM" amino acids 4 to 387 (384 residues), 201.5 bits, see alignment E=1.4e-63

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2431)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVJ1 at UniProt or InterPro

Protein Sequence (393 amino acids)

>HSERO_RS12150 iron-regulated membrane protein (Herbaspirillum seropedicae SmR1)
LVLLHRWTGLGMAFFLIVTSLTGSLLVFDDELDAWLAPQLQLAQPAPGQSAQAMMDPYLL
REKVAQAMGPQVHISQLVLHARPGRTVSFQADPATDPATGKPYRLGYDEILVNPYTGVVQ
GVRDRDKISLKPADLMPFLFKLHHSLALPRAPGALLLGTVGLLWTLDCFVGMILTWPRAR
PFLVKWKPAWLIKWRAGFYRVNLDLHRAFGLWCWVMLLLFAWSSVMLNLRDQIYLPVMSR
ILSFDTSWRPGPPLPQALSGPPQSWPEAHALARRTMDGFARQRGLVIDFEEKLDFDRRRG
VYIYLVHSNADLRADVGNTGLRIDARTGKILGHWLPVGDRDGNTFSNWLGALHMGHVFGL
PWRILLVLVGGAVSLLTVTGVVVWWKKRAARRL