Protein Info for HSERO_RS11985 in Herbaspirillum seropedicae SmR1

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 transmembrane" amino acids 66 to 87 (22 residues), see Phobius details amino acids 96 to 124 (29 residues), see Phobius details PF11181: YflT" amino acids 10 to 76 (67 residues), 33.1 bits, see alignment E=3.5e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2398)

Predicted SEED Role

"Putative cation transport regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVF8 at UniProt or InterPro

Protein Sequence (186 amino acids)

>HSERO_RS11985 permease (Herbaspirillum seropedicae SmR1)
MNVADSQLAVATYSTHVQAESAIKELQRLGFDMKKISIVGRDYRLEEHVVGFLNAGTRAK
IYGKLGAFWGGLLGVLFGSALFSFPALGPVVALGPIAALIFSGLEGAVVVGGVSALAGAL
TAIGIPKDSVLRYQNCLQAGEFLLVVHGDEKEVVRAKTLLAASGHLSFEHHIVPGASKIA
VTTQYS