Protein Info for HSERO_RS11640 in Herbaspirillum seropedicae SmR1

Annotation: alpha-amylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1132 PF11896: GlgE_dom_N_S" amino acids 444 to 649 (206 residues), 186.4 bits, see alignment E=9.5e-59 PF00128: Alpha-amylase" amino acids 673 to 778 (106 residues), 22.7 bits, see alignment E=1e-08 PF21702: GLGE_C" amino acids 1023 to 1127 (105 residues), 57.1 bits, see alignment E=2.6e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2325)

Predicted SEED Role

"Alpha-amylase (EC 3.2.1.1)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.1)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IV85 at UniProt or InterPro

Protein Sequence (1132 amino acids)

>HSERO_RS11640 alpha-amylase (Herbaspirillum seropedicae SmR1)
LENLPLTDFSPRIYCVDPSLVASPDWDDLLGRCAAMGFDHVLLCGDLVDASFAEVAKLCK
GHRLRLLADLSLTRFYAGDPVLTSHADWFAPQSSAAVGLSSQDLASDPLPDPRYPSVMDE
RDDELVTRRARFDDPVAADAMLDWWRARLMTLVDAGVAGFRCQEPASIPADFWRRLIAGI
RQQQADCRFLAWTPGCTHDQLDGLAGIGFDAVFSSGAWWDFRDPWYFREYRKLAAIAPVL
AFPEDPSGPRLARVHGFRDPQTRRLGALRALQFATLSAEGWMMPMGFEFGLTAALRVAHR
AGSATRLSDPEAFKRACADADLDFTREITEANRTLAQRRQSPPKSLALRLTPLSAPDSPW
LLMERHGVNVEDGLLIAVNPALDRPVRITDDGWQQRLQESVAPWQEDGLVLEPGAVKVLP
LKPLQGVSGELDQATPALGDMRSRRIAIERVSPAVDDGAFAAKRIVGEHFVIAADIFMDG
HDHLAAEVLVRAADEAQWRRIPMHPDVNDRWQARVSLTRLGRHYFCIEAWSDVFDTFRDG
LQKKLMAGQDVSLEMEEGRLLIARLVQRAVEQELEPSVLESSRALLKALGGPPSKTRRSA
AGKQADTDKRLAFLCAEETRQLVEQLTGLAGERAFLSRTDAEYPLEAERRSAAFSSWYEL
FPRSQSGSADVHGNFDDVIARLPAIRAMGFDTLYFPPIHPIGKKHRKGKNNSVTAGPDDP
GSPYAIGSEEGGHDAIHPQLGTFEDFARLRDAAAAHGLELALDFAIQCSPDHPWLKTHPG
WFAWRPDGSMRYAENPPKKYQDIVNVDFYAEDAIPELWLALRDIVVFWVQQGVSVFRVDN
PHTKPFPFWEWMIASVRSRYPQVIFLSEAFTRPKPMYRLAKVGFSQSYTYFTWRHGKQEL
IDYLTELTTDTGHAAQPRDFFRPHFFVNTPDINPYFLQRSGRAGFQIRAALAATLSGLWG
VYSGFELGEANAVPGKEEYLDSEKYEIRSWDWQRPGNIIEDITRLNRIRTENPALQTHLG
VRFLPVSNDQILYFVKSTPAAPSGRAAVEGGLRFGDNTILVAINLDPFQSQQGEIELPLA
GFGLPEGAEPAHLEVVDLLGEDRFKWYGRHQSITLDPRERPYRIWRIRAGET