Protein Info for HSERO_RS11515 in Herbaspirillum seropedicae SmR1

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF05170: AsmA" amino acids 7 to 152 (146 residues), 68.6 bits, see alignment E=5.3e-23 amino acids 188 to 543 (356 residues), 111.3 bits, see alignment E=6.2e-36 PF13502: AsmA_2" amino acids 397 to 572 (176 residues), 69.1 bits, see alignment E=4.4e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2300)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUD7 at UniProt or InterPro

Protein Sequence (643 amino acids)

>HSERO_RS11515 histidine kinase (Herbaspirillum seropedicae SmR1)
MKLLGRALAALAALLVALLLALALAVPLLDWNSAKPWLGRQLSAALGRDIRVDGNLDLSW
SLAQADDEAGALARLAPQLRLRAERLFIGNPDWAHSSDHLVRAAALDVRFSPLPLLHWHW
HVTDLRVEGLDLVMERADDQRKNWRFSSQPRSRWSFDIHRIVFGHALIRYVELPLDLDLR
FDARPLNATATNQKDSAALVLQAAVTGRYGQAEVNGQIKGGALPDLLNEGSVFPLQAEGD
IGGVQTQLSGNLINPHQLSRADLRIGLAGDSLDRLYPATGVPLPATRAFHTEGALTITRL
DPQTKAWDWRYSGFSGKVGESDFAGDAQYVRGPPKNHLKVKAEAGLLRLSDYLPGDDADQ
GKPSKPAQPERWSKLDADIDLQAKRVQWRAGLEWQQAAATLTLKDQVLTADPLRFNMAGG
QGQGQVRLDGRQPDIRSRLQIRLQDAQVRELFPRLASLKASFSKFNGEATLSATGNSAAA
VLASADGEIKADLGPGTISQFILEAAGLNLANAVFAKLYRDQQVKLLCGAADVAIQHGQA
TIRHGILNTEDAAIDVGGQVDLGRQTLALDIHPRTKQVRILSLRTPLHVRGSFSHPEIGA
DSGALAARAGAAAALALVAPVAAVIPLISPGQAASDDCAARAR