Protein Info for HSERO_RS11450 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF00005: ABC_tran" amino acids 21 to 174 (154 residues), 129.9 bits, see alignment E=1.6e-41

Best Hits

Swiss-Prot: 54% identical to GLUA_CORGL: Glutamate transport ATP-binding protein GluA (gluA) from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)

KEGG orthology group: K02028, polar amino acid transport system ATP-binding protein [EC: 3.6.3.21] (inferred from 100% identity to hse:Hsero_2288)

Predicted SEED Role

"Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)" in subsystem Bacterial Cell Division (TC 3.A.5.1.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.21

Use Curated BLAST to search for 3.6.3.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUC5 at UniProt or InterPro

Protein Sequence (257 amino acids)

>HSERO_RS11450 ABC transporter ATP-binding protein (Herbaspirillum seropedicae SmR1)
MTEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG
TVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRK
AAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPEL
VGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQAR
TRSFLQTMLARQVADGN