Protein Info for HSERO_RS11400 in Herbaspirillum seropedicae SmR1

Annotation: exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 TIGR04122: putative exonuclease, DNA ligase-associated" amino acids 5 to 339 (335 residues), 493 bits, see alignment E=1.6e-152

Best Hits

KEGG orthology group: K07577, putative mRNA 3-end processing factor (inferred from 100% identity to hse:Hsero_2279)

Predicted SEED Role

"mRNA 3-end processing factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUB6 at UniProt or InterPro

Protein Sequence (355 amino acids)

>HSERO_RS11400 exonuclease (Herbaspirillum seropedicae SmR1)
MQDMVVVRKEGLYCVPGDFYIDPWRPVARAVITHAHADHARVGHAHYLAAAPGADILRAR
LGADIALDTLAYGASLTHNGVRLSLHPAGHVLGSAQLRMEHEGQVWVASGDYKLEADGTC
APFEPVRCHTFITESTFGMPIYRWQPQAEIFEEINAWWRANAAQGRASVLFCYAFGKAQR
ILHGIDASIGPIICHGAVAPLNRLYRQEGVALPETQTVNQGSPGSKSDGGKRSPSSAYAG
SLVIAPPSAAGSPWMRRFGDYSDAFASGWMRLRGTRRRRGVDRGFVLSDHADWPALQQAI
AATQAERIIVTHGQVATMVRWLRQNGLDAGAFATEYGDEAIEEMPAATAEPAPHA