Protein Info for HSERO_RS11225 in Herbaspirillum seropedicae SmR1

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details amino acids 218 to 242 (25 residues), see Phobius details amino acids 245 to 246 (2 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 8 to 270 (263 residues), 114.7 bits, see alignment E=2.2e-37

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 100% identity to hse:Hsero_2248)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IU85 at UniProt or InterPro

Protein Sequence (311 amino acids)

>HSERO_RS11225 branched-chain amino acid ABC transporter permease (Herbaspirillum seropedicae SmR1)
LEFALITFLNGLGYGFLLFLLSSGLTLIYSMMGVPNFAHASFYMLGAYVAYAIAGVLGFW
PALLIAPLVVGVAGALVEHYGLRIVHRYGHVPELLFTFGLSYLVVELVQLVWGRSPVPYR
IPPALDGTLFTLYTTAFPVYRGFMLLVAALMLLALWLLLRHTRIGLVIQAALTHPQMVEA
LGHNVPRVFMLVFGGGCALAALAGVIGGNAFVTEPGMAAAVGSIIFVVVVVGGLGSLAGA
FITSLLIGMMQTFAVALDVSLASLGLSVAPDSALAPLLRLTLAQVAPVLPYLLLVVMLIV
RPKGLMGQREG