Protein Info for HSERO_RS10890 in Herbaspirillum seropedicae SmR1

Annotation: ribosome recycling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 TIGR00496: ribosome recycling factor" amino acids 11 to 186 (176 residues), 219.7 bits, see alignment E=1e-69 PF01765: RRF" amino acids 21 to 184 (164 residues), 223 bits, see alignment E=1e-70

Best Hits

Swiss-Prot: 85% identical to RRF_JANMA: Ribosome-recycling factor (frr) from Janthinobacterium sp. (strain Marseille)

KEGG orthology group: K02838, ribosome recycling factor (inferred from 100% identity to hse:Hsero_2181)

Predicted SEED Role

"Ribosome recycling factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IU18 at UniProt or InterPro

Protein Sequence (186 amino acids)

>HSERO_RS10890 ribosome recycling factor (Herbaspirillum seropedicae SmR1)
MSVADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTL
IDARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKG
EAEDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKE
KEVMTV