Protein Info for HSERO_RS10875 in Herbaspirillum seropedicae SmR1

Annotation: 30S ribosomal protein S2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 TIGR01011: ribosomal protein uS2" amino acids 3 to 225 (223 residues), 319.4 bits, see alignment E=4.9e-100 PF00318: Ribosomal_S2" amino acids 8 to 223 (216 residues), 313.1 bits, see alignment E=3.9e-98

Best Hits

Swiss-Prot: 87% identical to RS2_JANMA: 30S ribosomal protein S2 (rpsB) from Janthinobacterium sp. (strain Marseille)

KEGG orthology group: K02967, small subunit ribosomal protein S2 (inferred from 100% identity to hse:Hsero_2178)

Predicted SEED Role

"SSU ribosomal protein S2p (SAe)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IU15 at UniProt or InterPro

Protein Sequence (246 amino acids)

>HSERO_RS10875 30S ribosomal protein S2 (Herbaspirillum seropedicae SmR1)
MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAQKYVRQLS
ANRGTILFVGTKRQAREILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAV
EDGSVEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI
PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGRANAVNDVVEAVKGDEF
VEVEQA