Protein Info for HSERO_RS10360 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 PF13424: TPR_12" amino acids 60 to 123 (64 residues), 32.5 bits, see alignment E=7.9e-11 PF07719: TPR_2" amino acids 60 to 91 (32 residues), 24.2 bits, see alignment (E = 2.3e-08) PF13181: TPR_8" amino acids 61 to 91 (31 residues), 18.9 bits, see alignment (E = 1.2e-06) amino acids 93 to 125 (33 residues), 14.1 bits, see alignment (E = 4.4e-05) amino acids 132 to 158 (27 residues), 15.3 bits, see alignment (E = 1.8e-05) amino acids 165 to 190 (26 residues), 12.3 bits, see alignment (E = 0.00017) amino acids 195 to 227 (33 residues), 12.8 bits, see alignment (E = 0.00011) amino acids 230 to 261 (32 residues), 17.6 bits, see alignment (E = 3.1e-06) amino acids 263 to 296 (34 residues), 14.4 bits, see alignment (E = 3.4e-05) amino acids 299 to 330 (32 residues), 16.2 bits, see alignment (E = 8.8e-06) PF13432: TPR_16" amino acids 63 to 123 (61 residues), 37 bits, see alignment 3.6e-12 amino acids 132 to 187 (56 residues), 17.5 bits, see alignment 4.3e-06 amino acids 200 to 262 (63 residues), 17.4 bits, see alignment E=4.8e-06 amino acids 270 to 331 (62 residues), 21.9 bits, see alignment E=1.8e-07 PF14559: TPR_19" amino acids 68 to 125 (58 residues), 38.7 bits, see alignment 9.6e-13 amino acids 206 to 264 (59 residues), 32.6 bits, see alignment 8e-11 PF13374: TPR_10" amino acids 92 to 121 (30 residues), 17.9 bits, see alignment (E = 2.4e-06) PF13176: TPR_7" amino acids 197 to 227 (31 residues), 16.4 bits, see alignment (E = 7.3e-06) PF13414: TPR_11" amino acids 236 to 273 (38 residues), 27.7 bits, see alignment 1.6e-09 amino acids 309 to 345 (37 residues), 29.1 bits, see alignment 6.2e-10 PF00515: TPR_1" amino acids 297 to 330 (34 residues), 29.8 bits, see alignment (E = 3.7e-10)

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2072)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IT13 at UniProt or InterPro

Protein Sequence (658 amino acids)

>HSERO_RS10360 hypothetical protein (Herbaspirillum seropedicae SmR1)
MSTRKNSNKHGKPATPPPKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFA
NHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIR
IDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAV
AVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLK
LNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTY
NNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVT
RERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVA
LHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLS
ADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATLFQLPNIEFY
SLQKGKPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHP
TWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKAGR