Protein Info for HSERO_RS10345 in Herbaspirillum seropedicae SmR1

Annotation: flagellar hook protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 690 PF02465: FliD_N" amino acids 15 to 83 (69 residues), 46.3 bits, see alignment E=8.3e-16 PF07196: Flagellin_IN" amino acids 126 to 180 (55 residues), 28.8 bits, see alignment 1.7e-10 PF07195: FliD_C" amino acids 435 to 673 (239 residues), 189.8 bits, see alignment E=8e-60

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 100% identity to hse:Hsero_2067)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IT08 at UniProt or InterPro

Protein Sequence (690 amino acids)

>HSERO_RS10345 flagellar hook protein (Herbaspirillum seropedicae SmR1)
MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY
QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT
FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT
GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL
SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND
HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN
IAPVANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTSD
YAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNIS
NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN
TLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTNT
TSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTNQ
FNQLNLTLSSMQSTQSYLTQQLANLAKSSG