Protein Info for HSERO_RS10290 in Herbaspirillum seropedicae SmR1

Annotation: flagellar biosynthesis protein FliJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 TIGR02473: flagellar export protein FliJ" amino acids 6 to 140 (135 residues), 99.6 bits, see alignment E=1e-32 PF02050: FliJ" amino acids 19 to 140 (122 residues), 110.8 bits, see alignment E=2.6e-36

Best Hits

KEGG orthology group: K02413, flagellar FliJ protein (inferred from 100% identity to hse:Hsero_2055)

Predicted SEED Role

"Flagellar protein FliJ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISZ6 at UniProt or InterPro

Protein Sequence (146 amino acids)

>HSERO_RS10290 flagellar biosynthesis protein FliJ (Herbaspirillum seropedicae SmR1)
MATPSALDTLIELATKETDEATKRLGRAVRVSEEAQQKLGILQQYRDDYAARFQETLSNG
LTALSYRNFQLFIEKIDNAIAGQEDVVRSSQQRVAEARAAWQACERKRMSYDTLATRARD
KEMQKQNKRDQKSMDEHASRITFYKR